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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.8KG395700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 321aa MW: 34013.5 Da PI: 10.0659 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.8KG395700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.9 | 9.7e-18 | 85 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv +++ +G g+W++ ++ g+ R++k+c++rw +yl
Pavir.8KG395700.1.p 85 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 132
79******************************99************97 PP
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2 | Myb_DNA-binding | 53 | 8.1e-17 | 138 | 182 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T +Ede ++++++ lG++ W++Ia ++ gRt++++k++w+++
Pavir.8KG395700.1.p 138 RGNFTDDEDEVIIRLHAILGNK-WSLIAGQLP-GRTDNEIKNYWNTH 182
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MGRGKRAAAA ATRPPRASAI YTGGCPRGAA PRQHERELPS SADRAAVPSR PVSPPRAARH 60 LSGGACYLGG AMGRSPCCEK AHTNKGAWTK EEDERLVAYI RAHGEGCWRS LPKAAGLLRC 120 GKSCRLRWMN YLRPDLKRGN FTDDEDEVII RLHAILGNKW SLIAGQLPGR TDNEIKNYWN 180 THIKRKLLAR GIDPQTHRPH GSAAAAHRAA ALLHPATAVP ALASAAKPSP AASSSDDGAR 240 SSSSTSGGAS AGEPRCPDLN LDLSVGPPPP PPADTPTSRP VCLCYRLGLR AGEACGCQAD 300 HPSGTQGLRY FRPLEQGQFI *
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF372521 | 0.0 | EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds. |