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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG391800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 16698.9 Da PI: 11.0221 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 51 | 72 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cg+sFs+ L H +H Pavir.8KG391800.1.p 51 RCRTCGRSFSTFQALGGHRTSH 72 8**********99998888877 PP | |||||||
2 | zf-C2H2 | 16.1 | 3.2e-05 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H+r+H Pavir.8KG391800.1.p 101 HRCNACGMVFPTGQALGGHMRRH 123 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.783 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.39 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.02E-7 | 51 | 123 | No hit | No description |
Pfam | PF13912 | 4.0E-9 | 51 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.3E-11 | 100 | 125 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.556 | 101 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGDVATTRNA PAASTANRLL LLLSLSLSPA SKVIAKRGSK RLGADDAGAL RCRTCGRSFS 60 TFQALGGHRT SHSRPRVRAD GLDLLLGTRP GKGGGAATDA HRCNACGMVF PTGQALGGHM 120 RRHRAAAALD VAALGTTIPV SSEQGDDENE AGHLSSTLIQ FI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG391800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827389.1 | 1e-61 | zinc finger protein ZAT7-like | ||||
TrEMBL | A0A3L6PKM6 | 8e-67 | A0A3L6PKM6_PANMI; Zinc finger protein ZAT12-like | ||||
STRING | Pavir.Hb00003.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 8e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG391800.1.p |