PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG371600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 326aa    MW: 38113.2 Da    PI: 7.3233
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG371600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.21.1e-1737121191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          kfY+ YA ++GF+vrk++++++      t ++f C+k+g+ e  k + e++ r++++ r++Cka +k kk++ +g w  ++++leH+H+l
  Pavir.8KG371600.1.p  37 KFYCYYAGKAGFDVRKTRTNRK------TVAEFSCNKQGHWEFYKPD-EERTREKMSMRCECKAFVKAKKNTkKGYWFFERIRLEHSHPL 119
                          6****************98887......7899*********999888.99999******************999***************9 PP

                 FAR1  90 ap 91 
                           p
  Pavir.8KG371600.1.p 120 HP 121
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1437121IPR004330FAR1 DNA binding domain
PfamPF105511.2E-24242325IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMMTPDPYKM YMHDPLLPAE VVPNEDLRFE SSAEAYKFYC YYAGKAGFDV RKTRTNRKTV  60
AEFSCNKQGH WEFYKPDEER TREKMSMRCE CKAFVKAKKN TKKGYWFFER IRLEHSHPLH  120
PSPRLTQFMN AHKNKDPVIM GIVDKMQHAD ASHNTTVNYL SDMYGGVQNF TFTEMDLKNR  180
RAASARSERE NDIPKLMEFF KEMKAQNPYF YEEVQVDENN VIKNVFWSHA SQRAEYKDFG  240
DVVTFDTTYR TNMYSMPLAM FVVSNHQLQN VVFGQALLHD EKADTFEWLF KAFKNCMSGS  300
EDPQCILTDQ DSSMAAAIPR VFPNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG371600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681792.11e-173protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368PYX31e-155A0A368PYX3_SETIT; Uncharacterized protein
STRINGPavir.J28938.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-42FAR1-related sequence 5