PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.8KG359700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 394aa MW: 43300.7 Da PI: 6.7559 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.8 | 1e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+s rqvt+skRr gilKKA+ELS+LCd++ +++fs++gk Pavir.8KG359700.2.p 10 KLENSSGRQVTYSKRRSGILKKAKELSILCDIDLILLMFSPSGK 53 679***************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.656 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.15E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-19 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MGRVKLKIKK LENSSGRQVT YSKRRSGILK KAKELSILCD IDLILLMFSP SGKPTVCIGE 60 KSNIEEVIAK YAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSG GQTVEELSSH 120 IGSLQCQMAD VQKRLSYWGD PEKIENIDHI RGMEQSLKES LNRIRIHKEN FAKQHLIGLQ 180 CAAAQFQTDM QLPLGLTGDP GPSSWFQNGG ADGQQTMMLP DDSGLLHQRD IGCSTSTSLQ 240 SYPGYFSMSK QSTDTGGGSE HGQPAVHQQP PDFGQAECLT HLGAQFPYTP FDTSLFNERM 300 FRPDAMELHD GSAGIDFGGG HFGMPRPGDE ASFQNWASAA CGAAMFDHHQ QQQHHQQQQP 360 SSAQIPAATT LAPASFDHAA VKQDPSQHQQ VMI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.8KG359700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828481.1 | 0.0 | agamous-like MADS-box protein AGL65 | ||||
Swissprot | Q7X9I0 | 1e-86 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A2T7CQU5 | 0.0 | A0A2T7CQU5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04162.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-78 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.8KG359700.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|