PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG345000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 289aa    MW: 33053.1 Da    PI: 7.3426
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG345000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039104126223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+++++++ +L  H +  H
  Pavir.8KG345000.1.p 104 SCSVCSRVYPTSRLLSIHVSEaH 126
                          6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003558.776101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028078101IPR007087Zinc finger, C2H2
SMARTSM003555.4103126IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105126IPR007087Zinc finger, C2H2
SMARTSM003550.33141166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MQQRPEDAME EVEPEAAAAP ELGFWLAARR RLAPDDPFFA AGDLERELLA KHVALDLSED  60
DRSQLEKMEV ASTCTVFCPI AGCGAHLDCL EDFEDHYVTR HTASCSVCSR VYPTSRLLSI  120
HVSEAHDSYF QAKVARGFPM YECLVEGCGV KLKSYKSRQQ HLIDKHQFPK SFEFFKKARP  180
SQRQRQKSQR RQTAHKGEET RDNSMDVDGK GTRQTNWRYR PKQHDHKELK ENECQHKEAK  240
ENEMEVEQKI DELTSAVSKL STADSTPANI IFGHRRSRGL TFVPRSIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.55700.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG345000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826617.10.0zinc finger protein 511
TrEMBLA0A3L6PG640.0A0A3L6PG64_PANMI; Uncharacterized protein
STRINGPavir.Hb01384.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-90zinc ion binding;nucleic acid binding;zinc ion binding