PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG323200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 181aa    MW: 19153.7 Da    PI: 10.4404
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG323200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.9e-393797363
               zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                          +a++cprC+stntkfCyynny+lsqPr+fC+aCrryWt GGalrn+PvGgg+r+ k+sss
  Pavir.8KG323200.1.p 37 AEAVRCPRCESTNTKFCYYNNYNLSQPRHFCRACRRYWTMGGALRNIPVGGGCRRAKRSSS 97
                         6789****************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.9E-333994IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-254094IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1064094IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MQELRSIPGL DGQPFHVAGA PSGLRRAQAA QYQRKAAEAV RCPRCESTNT KFCYYNNYNL  60
SQPRHFCRAC RRYWTMGGAL RNIPVGGGCR RAKRSSSTDA KNPRSNSGST TMTAATATAP  120
ATPSSNSNTA VHVAPPAPIF ADQAAVLASL FPPPPLPLFS FTAMDKVAAS ALLAESNPPT  180
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.72714e-69callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in germinating seeds up to 5 days after imbibition. {ECO:0000269|PubMed:11470159}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG323200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9554939e-70AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822624.14e-51dof zinc finger protein 4-like
SwissprotQ6Z3454e-44DOF4_ORYSJ; Dof zinc finger protein 4
TrEMBLA0A2S3GST59e-50A0A2S3GST5_9POAL; Uncharacterized protein
STRINGPavir.J33457.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64963050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.18e-34TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]