PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.8KG243200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 716aa MW: 78894.2 Da PI: 5.2747

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG243200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	331.2	2e-101	334	706	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++L++cA+av++++ + a++lL ++++++sp+gd++qRla++f+ +L+arla+s+s++y++l +++ s + + l+a++++ +s + Pavir.8KG243200.1.p 334 STVLIHCAQAVATDNRRSATELLRQIKQRSSPRGDATQRLAHCFADGLEARLAGSGSQVYRSLMAERIS---VMDYLKAYQVYLAASCFK 420 578**********************************************************999998...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 +++ N +I + ++g ++vHi+D++i++G+QWp+Ll +a+ ++gpp++RiTg++ p++g + ++eetg+rL++ A++lgvpf+f+ Pavir.8KG243200.1.p 421 MMAFKFSNMTISKVIAGRKKVHIVDYGIQYGFQWPSLLGYMATLKGGPPQVRITGIDLPQPGfrPASRIEETGRRLSNCASQLGVPFKFH 510 **********************************************************99************************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 +v r+e++ +++L+++p+E+l+Vn++ + +l+de v+++s +rd vL+ +++++P+ +++ +a+++++ F++rf eal ++sa+ Pavir.8KG243200.1.p 511 SMVKARWETIGVDDLNIDPDEVLIVNSIRNFGNLMDEGVDIDSpsPRDVVLSNIRKMKPDAFILFVMNASYSAPFFVTRFREALFFHSAM 600 9999*******************************9999889**************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 fd+l+a++pr++++r vEr l+++ + nvvaceg +r+er et+++W+ r ++aG++++pl+ + +k+++ +r+++ + + ++ ++++ Pavir.8KG243200.1.p 601 FDMLDATAPRDNHQRFLVERGLFRKCALNVVACEGLDRVERAETYKQWQVRNHRAGLRQLPLDPDGVKDVREKVREHYHKDFVIDVDHQW 690 **************************************************************************888***** PP GRAS 358 lvlgWkdrpLvsvSaW 373 l+ gWk+r L+++S W Pavir.8KG243200.1.p 691 LLEGWKGRILYAMSTW 706 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.916	307	687	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-99	334	706	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MAATPEGLFA DPEPFSPSVF LDLPPTPRPD GNGEGPASSD DLVLPFISRL LMEVNMDDNF 60 LYQFPDHPAL LQAQEPYARI LSDSNSSASG SAATLSPSSD HDPVQLLMSP LRPDMGLHDF 120 TGDDVGAFFL PAQDGASPEL EQNRVQSGTA GDANAFVAGR FGGGTGVQSS ALLDIADEQS 180 PAQLGSTTLP SPAGDGVLAS AFFSSQNGGD MDVLHTAFLK GMEEANKFLP TINNNLLIDQ 240 EGGRGDGSRG RKNRLNWDDD LEAETCRKSK LMVPEPEETG DKVDEMIVNG RELCLKEMEA 300 LRITMGSDAR KNTRKGKGKS AKGRWSADEA VDLSTVLIHC AQAVATDNRR SATELLRQIK 360 QRSSPRGDAT QRLAHCFADG LEARLAGSGS QVYRSLMAER ISVMDYLKAY QVYLAASCFK 420 MMAFKFSNMT ISKVIAGRKK VHIVDYGIQY GFQWPSLLGY MATLKGGPPQ VRITGIDLPQ 480 PGFRPASRIE ETGRRLSNCA SQLGVPFKFH SMVKARWETI GVDDLNIDPD EVLIVNSIRN 540 FGNLMDEGVD IDSPSPRDVV LSNIRKMKPD AFILFVMNAS YSAPFFVTRF REALFFHSAM 600 FDMLDATAPR DNHQRFLVER GLFRKCALNV VACEGLDRVE RAETYKQWQV RNHRAGLRQL 660 PLDPDGVKDV REKVREHYHK DFVIDVDHQW LLEGWKGRIL YAMSTWVADD AISEL*

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MAATPEGLFA DPEPFSPSVF LDLPPTPRPD GNGEGPASSD DLVLPFISRL LMEVNMDDNF  60
LYQFPDHPAL LQAQEPYARI LSDSNSSASG SAATLSPSSD HDPVQLLMSP LRPDMGLHDF  120
TGDDVGAFFL PAQDGASPEL EQNRVQSGTA GDANAFVAGR FGGGTGVQSS ALLDIADEQS  180
PAQLGSTTLP SPAGDGVLAS AFFSSQNGGD MDVLHTAFLK GMEEANKFLP TINNNLLIDQ  240
EGGRGDGSRG RKNRLNWDDD LEAETCRKSK LMVPEPEETG DKVDEMIVNG RELCLKEMEA  300
LRITMGSDAR KNTRKGKGKS AKGRWSADEA VDLSTVLIHC AQAVATDNRR SATELLRQIK  360
QRSSPRGDAT QRLAHCFADG LEARLAGSGS QVYRSLMAER ISVMDYLKAY QVYLAASCFK  420
MMAFKFSNMT ISKVIAGRKK VHIVDYGIQY GFQWPSLLGY MATLKGGPPQ VRITGIDLPQ  480
PGFRPASRIE ETGRRLSNCA SQLGVPFKFH SMVKARWETI GVDDLNIDPD EVLIVNSIRN  540
FGNLMDEGVD IDSPSPRDVV LSNIRKMKPD AFILFVMNAS YSAPFFVTRF REALFFHSAM  600
FDMLDATAPR DNHQRFLVER GLFRKCALNV VACEGLDRVE RAETYKQWQV RNHRAGLRQL  660
PLDPDGVKDV REKVREHYHK DFVIDVDHQW LLEGWKGRIL YAMSTWVADD AISEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-38	339	707	25	379	Protein SCARECROW
5b3h_A	2e-38	339	707	24	378	Protein SCARECROW
5b3h_D	2e-38	339	707	24	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG243200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826966.1	0.0	scarecrow-like protein 30
TrEMBL	A0A2T7CRD8	0.0	A0A2T7CRD8_9POAL; Uncharacterized protein
STRING	Pavir.Hb00043.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-146	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG243200.1.p