PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG217700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 385aa MW: 42253.1 Da PI: 6.2521

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG217700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23	2e-07	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+r nL+ H+r H Pavir.8KG217700.1.p 150 HSCKVCGKGFKRDANLRMHMRGH 172 79*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.2E-5	148	175	No hit	No description
SMART	SM00355	0.0017	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.321	150	177	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-6	150	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2
SMART	SM00355	43	198	231	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	27	236	258	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MEVRNNNVES SMEAHRELHD HRHSQAGGSG SDDPRTTVLT YLTFLEQKIA HLRGIICSAP 60 RPPQQIVSAE LSCIAVQLVS ISNTLAAASG AAAEEDAKSP PRAATPSEGD SDSSDHDLHA 120 EDDDELRLPP AGSYEVIELD KEEILAPHVH SCKVCGKGFK RDANLRMHMR GHGEEYKTAA 180 ALAKPAGMDA PPPARCFYSC PFVGCKRNRE HKSFQPLKTA VCVKNHYRRS HCDKSYTCRR 240 CNVKRFSVLA DLRTHEKHCG RDRWVCSCGT SFSRKDKLFG HVAAFDGHAP ALPPEEADHS 300 AANGHGSASD QMLMETEAAR RMANNQERFS DSIFDDLSCS DIKGFPLTDT QCLDDERGSL 360 FPMDLYSCDF DGFDLFGAPG IADF*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MEVRNNNVES SMEAHRELHD HRHSQAGGSG SDDPRTTVLT YLTFLEQKIA HLRGIICSAP  60
RPPQQIVSAE LSCIAVQLVS ISNTLAAASG AAAEEDAKSP PRAATPSEGD SDSSDHDLHA  120
EDDDELRLPP AGSYEVIELD KEEILAPHVH SCKVCGKGFK RDANLRMHMR GHGEEYKTAA  180
ALAKPAGMDA PPPARCFYSC PFVGCKRNRE HKSFQPLKTA VCVKNHYRRS HCDKSYTCRR  240
CNVKRFSVLA DLRTHEKHCG RDRWVCSCGT SFSRKDKLFG HVAAFDGHAP ALPPEEADHS  300
AANGHGSASD QMLMETEAAR RMANNQERFS DSIFDDLSCS DIKGFPLTDT QCLDDERGSL  360
FPMDLYSCDF DGFDLFGAPG IADF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG217700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104487	1e-107	AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence.
GenBank	AK287605	1e-107	AK287605.1 Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence.
GenBank	AP014959	1e-107	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-107	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794847.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	1e-101	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A3L6SDL0	0.0	A0A3L6SDL0_PANMI; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRING	Pavir.J01834.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	9e-96	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG217700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]