PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG211700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 325aa    MW: 35331.8 Da    PI: 7.5866
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG211700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052125145323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C+ C+k+Fs+   L  H++ H
  Pavir.8KG211700.1.p 125 CTTCNKTFSSYQGLGGHMSIH 145
                          ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.53E-6122149No hitNo description
Gene3DG3DSA:3.30.160.609.1E-4123149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-9123146IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.655123150IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
PfamPF139120.011176195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGSHRREDNK RMRAMQEQPV PVEASQTDVA SLPKTSKRKK PKFKHDREVS ASEALVEMSA  60
APVWNPKYGT ATIDLSTIVT FSSDPHSSGE TAMMSEAADI LTTLVDRISK ETVKVASPLS  120
GDFLCTTCNK TFSSYQGLGG HMSIHNKQKK SLLEDASGSS SGCGERCTRK YVRRKCNKRF  180
PTGQSSFGGH KRKHCYEEHK MMVLTDGNGK PPMPLPHENV PSAGTAVLPP DEKSQLPVLL  240
GSSDNVQPTR IDLVVENNSN IHQPMPQDFD AVQQPQQANS LGNETEPPPV APTILVDTTA  300
DLSASRRVLD LNMLPPKTDD GSEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG211700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S6E02e-83A0A368S6E0_SETIT; Uncharacterized protein
STRINGPavir.Hb01284.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2236947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-09C2H2 family protein