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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG141800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 22545.9 Da PI: 9.6196 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 123 | 143 | 2 | 22 |
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C+ C +++r+s+L++H+r Pavir.8KG141800.1.p 123 ICSLCQARCTRQSELENHLRG 143 7******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-8 | 49 | 89 | No hit | No description |
SMART | SM00451 | 5.7E-5 | 54 | 88 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.95 | 57 | 81 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 1.7E-5 | 57 | 81 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.06E-10 | 99 | 152 | No hit | No description |
SMART | SM00451 | 0.021 | 119 | 153 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 0.058 | 122 | 146 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.2E-8 | 122 | 146 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 124 | 146 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.93E-6 | 156 | 193 | No hit | No description |
SMART | SM00451 | 0.59 | 162 | 196 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 62 | 165 | 189 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDLFHLPGKR TSQGNLREHF AGQKHWSKVA SLVSKINAKS QKAKETAEKS GNALPMWVCR 60 FCQSSCTCQS DLENHMKGKR HQRNIRALME ECKNMENNYA SPKVKSDLNN VPRDEEGRAP 120 TWICSLCQAR CTRQSELENH LRGKRHRLNF LLLQVEEAKL YLSLNFCEVC NLQCNSEKML 180 AHYRTGKKHL AKLNGC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG141800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801575.1 | 8e-59 | UBP1-associated proteins 1C-like | ||||
TrEMBL | A0A3L6T404 | 5e-61 | A0A3L6T404_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Hb01006.1.p | 1e-135 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG141800.1.p |