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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG125900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 323aa MW: 35593.5 Da PI: 7.1605 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.6 | 9.1e-22 | 118 | 181 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE....EEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv....veitYegeHnhe 59 Dgy+WrKYGqK+++g+ ++rsYYrCt + gCp+k+ v+r++ + + +++Y geH+++ Pavir.8KG125900.1.p 118 DGYQWRKYGQKQIEGAIYARSYYRCTRSaeqGCPAKRTVQRNDGGGGAaapkYTVVYMGEHTCT 181 9*************************988889**********97765412226899*****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-22 | 110 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-20 | 112 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-26 | 116 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.546 | 118 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.7E-23 | 118 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MTLLVVGPQQ GDDELQAQLR DLMLFFMPSP TTTKAEQQPP APSSSCCDGR RRRPRGSKRG 60 RPQDDDSKSY NGGEQHLEPP RHKSCKTSRK QQNKQRRQKM SGGGGGTSSL VTSVPDFDGY 120 QWRKYGQKQI EGAIYARSYY RCTRSAEQGC PAKRTVQRND GGGGAAAPKY TVVYMGEHTC 180 TPNDDSMEAP PVILETTAVV PAVIKSTNNR RTPQDHHHDD TVPLLLLVSP STNNTVTAGI 240 DESPAFSDDI TYWSRLFGVH DSWAPATAAA LQEMEEDYFT GPIRSPVHIA AADACWTIDD 300 HHLLLQQLAS NDQHHTVSHF SF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG125900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058632 | 9e-93 | KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828063.1 | 8e-84 | probable WRKY transcription factor 69 isoform X2 | ||||
TrEMBL | A0A2T7E4K4 | 2e-87 | A0A2T7E4K4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00085.1.p | 1e-177 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 6e-15 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG125900.1.p |