PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG076600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 24477.8 Da PI: 9.8359 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 4 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEd l + v+ +G+ +W++I++ ++ gR +k+c++rw ++l Pavir.8KG076600.1.p 4 KSAWTKEEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWCQHL 50 579*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.4e-15 | 59 | 101 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd +++ ++++++++ W+tIa ++ gR+++ +k+rw+++ Pavir.8KG076600.1.p 59 PFTPEEDAKIASLHRLYPNK-WATIAGFLP-GRSDNAVKNRWNSV 101 79******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.457 | 1 | 54 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 2 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.02E-29 | 3 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-16 | 3 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 4 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.10E-15 | 6 | 50 | No hit | No description |
SMART | SM00717 | 2.0E-12 | 56 | 104 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.325 | 58 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-19 | 59 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.43E-12 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMKKSAWTKE EDAALREQVR AHGPQNWAAI SAALPGRNPK SCRLRWCQHL APGVDAARPF 60 TPEEDAKIAS LHRLYPNKWA TIAGFLPGRS DNAVKNRWNS VLGKQPQPQH QRWALAAPLR 120 RVSDGTLPLF PLASGDVRAC GRSARVLRHP PPGGGDAGAA DLSGGACLEL FPLAPGDLVV 180 GSNGTSEAPE MDADRGDDDP TATGLRLWPC TRAASMAAFK AMVQAVRAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 4e-27 | 4 | 105 | 2 | 102 | MYB3 |
3zqc_D | 4e-27 | 4 | 105 | 2 | 102 | MYB3 |
3zqc_G | 4e-27 | 4 | 105 | 2 | 102 | MYB3 |
3zqc_J | 4e-27 | 4 | 105 | 2 | 102 | MYB3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG076600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798530.1 | 1e-132 | myb-related protein 308-like | ||||
TrEMBL | A0A3L6SC90 | 1e-131 | A0A3L6SC90_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Hb01126.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 6e-36 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG076600.1.p |