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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.8KG067900.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 478aa MW: 53105.7 Da PI: 4.5378 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.8KG067900.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 212 | 3.1e-65 | 111 | 475 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86
+lLl+ Aeav++gd la+ + ++l e+ + +++++ Rla +f ++L++r+++ +++p+ ++ ++s +++++++ +e
Pavir.8KG067900.1.p 111 SDLLLTGAEAVEDGDSGLASVVFSKLDEIlpftfENAAASSFDRLAYHFFQGLQSRMSG------ASFPCYLPEP-EQSGTMSVHQMIQE 193
689*************************987776677779*******************......6666666654.4566779999**** PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger.LakfAeelgvp 175
+sP++kf+h+taNqaIl+a++g+ vHiiDf++s+G+QW +L+ La + g s+ +T++ +++++++++t+ r La+fAe+l++p
Pavir.8KG067900.1.p 194 LSPFVKFTHFTANQAILDATSGDMDVHIIDFNLSEGIQWSSLMSDLARQ--GGKSFHLTAILVDPADDSNNTHHTATRcLAEFAESLNLP 281
***********************************************85..5579999**9776666555555555444*********** PP
GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerfl 258
f+++ l +++ edl e+++ + + +++V++ +l +s s + +L++vk+l+Pk+vv++e+e ++++++sF+e f+
Pavir.8KG067900.1.p 282 FQYSSLCMHNKEDL--EDFSRNCEGSIVVSCDT--TNLCYKSCSKLQ--MLLLSCVKNLQPKLVVIIEEElvrigkeVSTTHSSFVEFFF 365
*****988877777..999999999******98..455544444444..79*****************996555544566667******* PP
GRAS 259 ealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
eal++++++f+sl++ +++ + + vEr ++g++i++ v + + + + GF + ls + +qa++l+ ++
Pavir.8KG067900.1.p 366 EALHHFTMVFESLASCFSTSNnsVCLTLVERGMVGPKIQDFVGQYRSV--ALGVPP---PQY--LEGFMSSDLSACNIAQARMLVGLFN- 447
*************988776664467899**************988776..333333...333..45***********************. PP
GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
+ + v +e+g l l+Wk+rpL+svS+W+
Pavir.8KG067900.1.p 448 RSFGVTHEKGRLQLCWKSRPLISVSVWT 475
66*************************6 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 478 aa
Download sequence Send
to blast |
METMSYPCSP LLSFPIHEES SYSLWSPQLA HHENSSIDSS NTHGHENSSA FPYFREDCEF 60
FDTTAIDSSD THGQNAFHVD VFTHCPERLL QQESGNLVTI QEELMEENSL SDLLLTGAEA 120
VEDGDSGLAS VVFSKLDEIL PFTFENAAAS SFDRLAYHFF QGLQSRMSGA SFPCYLPEPE 180
QSGTMSVHQM IQELSPFVKF THFTANQAIL DATSGDMDVH IIDFNLSEGI QWSSLMSDLA 240
RQGGKSFHLT AILVDPADDS NNTHHTATRC LAEFAESLNL PFQYSSLCMH NKEDLEDFSR 300
NCEGSIVVSC DTTNLCYKSC SKLQMLLLSC VKNLQPKLVV IIEEELVRIG KEVSTTHSSF 360
VEFFFEALHH FTMVFESLAS CFSTSNNSVC LTLVERGMVG PKIQDFVGQY RSVALGVPPP 420
QYLEGFMSSD LSACNIAQAR MLVGLFNRSF GVTHEKGRLQ LCWKSRPLIS VSVWTPV*
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