PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG045500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 313aa MW: 35099 Da PI: 7.1825 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 91.3 | 7.3e-29 | 84 | 174 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++ede g+ W+++++y+ +s++yvltkGW+++ k+++L++gD+v F++++ Pavir.8KG045500.2.p 84 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYIKEKQLDAGDVVHFERMR 173 99***************************9666668889************************************************764 PP S CS B3 87 r 87 Pavir.8KG045500.2.p 174 G 174 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-39 | 79 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-28 | 81 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-26 | 83 | 174 | No hit | No description |
PROSITE profile | PS50863 | 13.535 | 84 | 189 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-26 | 84 | 174 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-21 | 84 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MPDQETCMVL YATHHHCYSS LPASFRCRQE PNTHLFAPQT LSSPPASRTA MNHLSQEHPQ 60 AWPWGVAMNT NLHYQHYYEK EYLFEKPLTP SDVGKLNRLV IPKQHAERYF PLSGDSGEKG 120 LILSFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYIKEKQ LDAGDVVHFE RMRGFGMADR 180 LFISYRRRGE SATGAAASPP AVCVAAPAQS AGGEQQPWSP MCYSTSGSYP TSPANSHAYR 240 HSVDNDHSNM QHAGESQCDR YSRSCSAASA APPRRLRLFG VNLDCGPEPD PEPETPTTIY 300 SYMDQSPYAP NT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-51 | 79 | 188 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-51 | 79 | 188 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12100 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG045500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827829.1 | 1e-172 | B3 domain-containing protein Os11g0156000-like isoform X1 | ||||
Swissprot | Q53QI0 | 1e-119 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A2T7CKD2 | 1e-171 | A0A2T7CKD2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01814.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 2e-54 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG045500.2.p |
Publications ? help Back to Top | |||
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