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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.8KG035000.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 338aa MW: 38255.1 Da PI: 8.3367 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.8KG035000.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 238.7 | 2.5e-73 | 3 | 314 | 110 | 374 |
GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL... 194
+ v iiD++ s ++ QW+ Ll+ + R++gpp++R+T+v++ +++ l +++ L++ A++l++pf+f+ v rle+l+l++L
Pavir.8KG035000.1.p 3 KVVRIIDLSCStaHPWQWLKLLHDFHGRQGGPPEVRLTVVHD----DNDYLANMRILLSNEADKLKIPFQFSS-VIGRLETLDLSNLrnt 87
6789****87633799**************************....9**************************.6899999999888544 PP
GRAS 195 .rvkpgEalaVnlvlqlhrll...........................................desvsleserdevLklvkslsPkvvv 240
++k gEa+a++++lq+hrll + + ++++ ++L++v+ l+P+++
Pavir.8KG035000.1.p 88 lDIKYGEAIAISCSLQMHRLLvvddkvscsgigqlqkmaniaqlnqmassvyspastlnypqtpSPQCKMPKLLATFLSAVRALKPNIML 177
47777********************************************************99988888999999*************** PP
GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
v+eq+a+hn+ F +rf+eal+yy+alfds++a ++++ +er+ vEr++lg+ei+n++ ceg r erhe+l++W + ++++GF v
Pavir.8KG035000.1.p 178 VMEQDANHNALLFCDRFAEALNYYAALFDSFHAVVAANPrraDERSRVERMILGEEIKNILLCEGVYRHERHERLSQWAMHMDRSGFDHV 267
*******************************87764443344************************************************ PP
GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
pls +a + + l ++ +g + + e+++l+l+W +r L+s+SaWr
Pavir.8KG035000.1.p 268 PLSFRAIWEGNQKLMSFGLNGCQSKVENDCLLLCWGSRHLYSISAWR 314
**********************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MNKVVRIIDL SCSTAHPWQW LKLLHDFHGR QGGPPEVRLT VVHDDNDYLA NMRILLSNEA 60
DKLKIPFQFS SVIGRLETLD LSNLRNTLDI KYGEAIAISC SLQMHRLLVV DDKVSCSGIG 120
QLQKMANIAQ LNQMASSVYS PASTLNYPQT PSPQCKMPKL LATFLSAVRA LKPNIMLVME 180
QDANHNALLF CDRFAEALNY YAALFDSFHA VVAANPRRAD ERSRVERMIL GEEIKNILLC 240
EGVYRHERHE RLSQWAMHMD RSGFDHVPLS FRAIWEGNQK LMSFGLNGCQ SKVENDCLLL 300
CWGSRHLYSI SAWRPHKGST SGSREHMLVQ PQRQIIG*
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