PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG024700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 204aa    MW: 21513.7 Da    PI: 11.0113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG024700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-052143123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ Cgks++++  L  H  +H
  Pavir.8KG024700.1.p 21 YTCKFCGKSYTSHQALGGHVAKH 43
                         9***************9999988 PP
2zf-C2H215.35.8e-0581103123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k+F +   L  H+r+H
  Pavir.8KG024700.1.p  81 HQCRKCHKVFATGVALGGHMRVH 103
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-51444IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.88E-61845No hitNo description
SMARTSM003550.00842143IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-52144IPR007087Zinc finger, C2H2
PROSITE profilePS501579.912148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
PfamPF139121.7E-780104IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-580108No hitNo description
SMARTSM003550.01681103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.86681108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
QPRSRHVVVP RRAAHRPQRE YTCKFCGKSY TSHQALGGHV AKHKSMQREA EAAAVAGMAM  60
PIQDGAALRR ARRAAEAALH HQCRKCHKVF ATGVALGGHM RVHYTGPPIV PARNKNNSKK  120
QGRLAPLAVQ DVAVAAPPPP TGLSLALSIK TEEAPSAAPA GAGRVVVRLF GIDISPKAQA  180
APLLEQQCSG TTEDFSVAGA HQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG024700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684312.12e-56zinc finger protein GLI4-like
TrEMBLA0A3L6Q2021e-80A0A3L6Q202_PANMI; Uncharacterized protein
STRINGPavir.Hb02017.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-11C2H2-like zinc finger protein