PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.7NG441000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 220aa MW: 23590 Da PI: 6.9323

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG441000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.9	3.3e-36	64	123	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+stntkfCyynnys++qPr+fC+aCrryWt+GG+lr+vPvGg++r+ k+ Pavir.7NG441000.1.p 64 QQQQLECPRCHSTNTKFCYYNNYSTAQPRHFCRACRRYWTHGGTLRDVPVGGASRRAAKR 123 6899************************************************99997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.2E-33	66	122	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-22	68	115	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.903	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MAPAAAASTL PATSAGAADA SKRPPASDAE PTGSPVLRHL QVSHEDGDEA ARKAGLGHQQ 60 HPRQQQQLEC PRCHSTNTKF CYYNNYSTAQ PRHFCRACRR YWTHGGTLRD VPVGGASRRA 120 AKRRRVDDAQ PSPPQTTARA EDAYRLMQDL SAFPCLSDGS FLPQLDLGAA PAPTFSSWQH 180 SVVPDFYDGL APWDDGTAGV TGAWDDIAGL ELSWPPPGN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	125	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG441000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971409	2e-74	EU971409.1 Zea mays clone 364006 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824347.1	1e-118	dof zinc finger protein DOF1.6-like
TrEMBL	A0A2S3IBM5	1e-117	A0A2S3IBM5_9POAL; Uncharacterized protein
STRING	Pavir.Gb00048.1.p	1e-159	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14047	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	3e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG441000.1.p