PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG434200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 394aa MW: 41667.6 Da PI: 9.891 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.5 | 7.4e-18 | 79 | 161 | 2 | 72 |
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+l Li+a+r +++r + + +++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++++ Pavir.7NG434200.1.p 79 WTLHETLILITAKRLDDDRRAGAVgaahghgspttpRSEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYESRNA 161 **************555544432123344455555599***************************************999864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.795 | 71 | 147 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 72 | 149 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.1E-12 | 78 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MSANTVAKAA PPMSGSSDPS PSSSAAASPL ALLRPHPHPH AHAHAHAGHL TPPSPASGAP 60 APPPPSPASA PRDYRKGNWT LHETLILITA KRLDDDRRAG AVGAAHGHGS PTTPRSEQRW 120 KWVENYCWNH GCLRSQNQCN DKWDNLLRDY KKVRDYESRN AAAAAAAAPG GGGGGAGALP 180 SYWSMERHER KDRNLPTNLA PEVFDALTDV LSRRAARRGG AAIAAAAPPP LALPPPPPPP 240 PPPPAPPSPP KPIVAQPRAP PPPPLPLPTA VAPPATSVSA EGLTGSSESG EEEDGSSEEG 300 VEPEPKRRRL NRLGSSVVRS ATVLARTLVA CEEKRERRHR EVLELEERRL RLEEQRTEVR 360 RQGFAGLISA VNSLSTAINA LVSDHRSGDS ASR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 305 | 309 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG434200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066872 | 0.0 | BT066872.1 Zea mays full-length cDNA clone ZM_BFb0081B07 mRNA, complete cds. | |||
GenBank | BT069839 | 0.0 | BT069839.1 Zea mays full-length cDNA clone ZM_BFb0299M14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448740.2 | 1e-130 | trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2T7D1G8 | 1e-135 | A0A2T7D1G8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00087.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 3e-40 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG434200.1.p |