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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.7NG428600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
C3H |
Protein Properties |
Length: 302aa MW: 31439.6 Da PI: 9.9453 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG428600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C + Ck+Gd+C+FaH++
Pavir.7NG428600.1.p 105 KTRMCTKYNTVEGCKFGDKCHFAHSE 130
8999999999999***********95 PP
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2 | zf-CCCH | 36.9 | 6.3e-12 | 268 | 293 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+lC +f + GtC +G+rC+FaHg+
Pavir.7NG428600.1.p 268 YKTKLCENFVK-GTCTFGERCHFAHGE 293
9**********.*************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.324 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.5 | 45 | 62 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-13 | 102 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.23 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-8 | 103 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 106 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.1370.10 | 4.5E-15 | 171 | 241 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.4E-11 | 171 | 241 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.257 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 7.2E-11 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 8.77E-15 | 174 | 265 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 4.57E-14 | 174 | 236 | No hit | No description |
SuperFamily | SSF90229 | 3.14E-9 | 266 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-15 | 266 | 297 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.244 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-8 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MERAAAARKR SRPETANGAA AGGKRSKETE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF 60 LHFVPGGYPA VAKMLNLGSP AVSAPARAPA DHAAVANSHP ASMGKTRMCT KYNTVEGCKF 120 GDKCHFAHSE RELGKPAYMT HEAPPMGGRF GGRPEPPPPV AMGPPAGNFG ASATAKISVD 180 ASLAGGIIGK GGVNTKQICR VTGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI 240 ATISASMPPK NPAPAGGRGG APGGRSNYKT KLCENFVKGT CTFGERCHFA HGENEQRRGA 300 A*
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