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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG422000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 23374.2 Da PI: 4.9849 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46.3 | 1.4e-14 | 96 | 176 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f n+Y++ GF v+k k++k +k t+vC++ k++++ + +++r++ r gCk +++v +gkw++t +++ HnH l+ Pavir.7NG422000.1.p 96 FVNAYGQLSGFAVVKGKNYKD------KKITLVCNRFRKPSDTANP-TRKRKRYGIPRSGCKMRVTVCII-NGKWQMTAVDNRHNHRLV 176 779*****************9......4678***********9998.99999999*******99999999.***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-12 | 96 | 176 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDDEDKMEDS TAGPIESRQI GKEIVSMLEK DIEIYGSQPG PETEENKGEP AEEENEDDVV 60 ECEEEEYFFP TPDEVEIAKA PEEGMTFNSI DEAQHFVNAY GQLSGFAVVK GKNYKDKKIT 120 LVCNRFRKPS DTANPTRKRK RYGIPRSGCK MRVTVCIING KWQMTAVDNR HNHRLVCSEE 180 LTKNFLKHRH MSEHEKNFSR ILQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG422000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684165.1 | 4e-52 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | K3Y5L3 | 7e-51 | K3Y5L3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb02294.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15170 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 2e-08 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG422000.1.p |