PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG385600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 402aa MW: 44753.9 Da PI: 6.5306 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.4 | 4.8e-11 | 113 | 150 | 6 | 43 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + rr+++NReAAr+sR+RKka+i++Le+ +L + + Pavir.7NG385600.1.p 113 VLRRLAQNREAARKSRLRKKAYIQQLETSRMKLAQLEQ 150 679************************86555554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-9 | 108 | 172 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.048 | 110 | 154 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.7E-8 | 112 | 151 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 7.16E-21 | 112 | 161 | No hit | No description |
SuperFamily | SSF57959 | 7.74E-7 | 113 | 155 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.7E-8 | 114 | 157 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 115 | 130 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 9.6E-29 | 198 | 273 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MMELYPGYLE DHFNLHKLSI GAAASPPEYM TSASAVQFAA APIRMGVYER PAPAPVMGMW 60 SSDPFKVDSG QATSGSTVME ADKFDTGLED VPQVALERAR STDQETSRPP ERVLRRLAQN 120 REAARKSRLR KKAYIQQLET SRMKLAQLEQ ELQRARQQGA YANGNLGDPN LGFAGTMDPG 180 VAAFEIDYSN WVEEQNRHTA ELRSALQGQT TELELRMLVE TGLNNYEHLF RIKALAANSD 240 VFYVTSGMWK TPAERFFLWI GGFRPSEVLK ILRPQLEPLT EAQLMAVGGL QHTLTQAEDA 300 LSQGMEKLQQ NLAETLTAAA DPFGPPDGYM MQMAPAVEKL KELVGFVTQA DHLRQTTLQQ 360 MHKILTTRQA ARGLLALGDY FQRLRALSHL WATRPRESAI S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3176 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00502 | DAP | Transfer from AT5G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG385600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823702.1 | 0.0 | transcription factor TGAL6-like isoform X1 | ||||
Refseq | XP_025823703.1 | 0.0 | transcription factor TGAL6-like isoform X1 | ||||
Swissprot | A0A0P0WFC8 | 0.0 | TGAL6_ORYSJ; Transcription factor TGAL6 | ||||
TrEMBL | A0A2T7D0I9 | 0.0 | A0A2T7D0I9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00388.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3571 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-127 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG385600.1.p |