 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.7NG381000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
WOX |
| Protein Properties |
Length: 242aa MW: 26586.3 Da PI: 10.0614 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7NG381000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 63.4 | 3.3e-20 | 92 | 151 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++++eq+++Le l++ r+p+ ++e+++++l +++ ++V++WFqN++a+e++
Pavir.7NG381000.1.p 92 TRWNPSPEQIKVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 151
8*****************99**************************************97 PP
|
| 2 | Wus_type_Homeobox | 115.6 | 2.3e-37 | 91 | 153 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+tRW+P+peQik+Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq
Pavir.7NG381000.1.p 91 TTRWNPSPEQIKVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 153
79***********************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MRLHHFLAVA YLDKAASPSP SSSPPSISSP SLTLSSSAAI PLGALQCLRP LAPKISFPEP 60
RKMVVLPELA RVRNAARLLH CTLLQVPASG TTRWNPSPEQ IKVLEMLYRG GMRTPNSFQI 120
EQITEELGKY GRIEGKNVFY WFQNHKARER QKQKRAALLT LSTTTTSSSL PAAETKDGLG 180
KKEEASSEDA SSRKRRRCRT WGDVHGEDVT TTTTTTTEVV ADCTDDVTLE LFPLRPQGKA 240
N*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT085195 | 1e-108 | BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds. |
| GenBank | EU964275 | 1e-108 | EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds. |
