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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.7NG369700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 448aa MW: 46826.3 Da PI: 6.7241 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG369700.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 15 | 4.4e-05 | 336 | 373 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++ +++ L++l+ + +K + a++L +++eYIk L
Pavir.7NG369700.1.p 336 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 373
677888999*******998.....8****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MGDHAEMLHA APAVVYSGAG AGGAVPHGGG WWNAAVPAPT CSTDLAGFGT WSAALAASYD 60 IAVEGGKAKS TTTASSESPG NNSSVTFQEP TGVADPVVGI GAAVHQQPLA AGYTDWTHPY 120 MSGGATLHGF QQDGHQDMSS RTEQQSPMAA SSLMSPSSNN LALQGHHQEQ DHHHQQLLSS 180 FGSELLLSPT SPYGFQSSSL LRSLMEPTAP AAAKPALPGF VQQYDQYGQQ MGQQASPAAA 240 RFAPGAIREP LQFTNDAPFW NSSAGFGVPA AAVPDEASVR SVKPSPAPRA ATVALKTAFE 300 GVGESSPIIN KKANGEPAFK KPRLQTPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA 360 SVLHETIEYI KFLHDQVGAL SAPYLKNGPQ VHVPQLKSSS PEKSKDDSHG EISLKGRGLC 420 LVPISSTFAV ASEVPVDFWT PFGANFR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT068256 | 1e-109 | BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds. |