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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.7NG357200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
ARF |
| Protein Properties |
Length: 655aa MW: 70630.1 Da PI: 9.8784 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7NG357200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 72.9 | 3.9e-23 | 143 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+lt+sd+++ g +++p+ +ae++ +++ +s + +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF
Pavir.7NG357200.1.p 143 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrAEPPVQS--VYARDVHGVEWTFRHIYRGTPRRHLLTTGWSNFVNKKKLLAGDSIVFL 230
89*********************999****9976666675..************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
+ ++++ +v+++r+
Pavir.7NG357200.1.p 231 --RGENGRVHVGLRRA 244
..4489999***9996 PP
|
| 2 | Auxin_resp | 113.2 | 2.5e-37 | 295 | 378 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a+ +++Fevv++Prast+eF+v+++ v+++++v++++GmRfkmafetedss++++ +Gt++gv+++d+ rWp+S+Wr+L+
Pavir.7NG357200.1.p 295 AARLAAAGQPFEVVHYPRASTPEFCVRAAAVRASMQVPWCPGMRFKMAFETEDSSRISWfMGTISGVHAADSARWPQSPWRLLQ 378
678999****************************************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 655 aa
Download sequence Send
to blast |
MSAAACAPTP LGMLTLAHRM APPPPLEEEE PAPGAGEGCV DAQLWFACAG SMCTVPPVGA 60
AVYYFPQGHA EQASAAVDMS AARGVPPFVP CRVAAVSYMA EPHTDEVFAR IRLVPLRPGE 120
PVADAADADA GDDHQHQPKP ASFAKTLTQS DANNGGGFSV PRFCAETIFP ELDYRAEPPV 180
QSVYARDVHG VEWTFRHIYR GTPRRHLLTT GWSNFVNKKK LLAGDSIVFL RGENGRVHVG 240
LRRAKRGFGV GGGDDGSPSL SVSGWDPYGN LVRGNAGGGA RSPSGKVPPE DVVAAARLAA 300
AGQPFEVVHY PRASTPEFCV RAAAVRASMQ VPWCPGMRFK MAFETEDSSR ISWFMGTISG 360
VHAADSARWP QSPWRLLQVT WDEPELLQNV KRVCPWLVEQ VSSMPNLHLP NFSPPPRKKQ 420
RIPEFPFEGQ PLFDPPFPPA RPLPPLAPHP HPHPHPHPLP FFPFPDGSAA AGIQGARHAQ 480
LAPFFSDLHT GNLQQSLLFC GVRPADHHAP AAPRISTDLA IGNPAAPPRR AALSTSCRQQ 540
GRRRQASGDN AFRAGDTDRG ADEEQQPDLV AGSHQEKVTQ HTGSLRLRLR RHRGQPCKEQ 600
PVGRGAGARA RARARAVQGL RGVGRRRPEP RPLGAGLVRG AARPPVPHVP DRRR*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 603 | 613 | RGAGARARARA |
| 2 | 624 | 631 | RRRPEPRP |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK364144 | 1e-156 | AK364144.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022B20. |
