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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7NG354300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 259aa MW: 28471.9 Da PI: 7.1035 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG354300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+ lv ++++G g+W++ ++ g+ R++k+c++rw +yl
Pavir.7NG354300.1.p 14 KGPWTPEEDKVLVAHIQRFGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 49.4 | 1e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++++eE++ +++++ qlG++ W++Ia++++ gRt++++k+ w++
Pavir.7NG354300.1.p 67 RGNFSKEEEDSIIRLHDQLGNR-WSAIAARLP-GRTDNEIKNVWHTN 111
89********************.*********.***********986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MGRAPCCEKM GLKKGPWTPE EDKVLVAHIQ RFGHGNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SKEEEDSIIR LHDQLGNRWS AIAARLPGRT DNEIKNVWHT NLKKRLEATK 120 GEEAAHEAPA GGSGKKRRPA AAKRGGARRA LAAAPVSPER SASSSVTESS VTEQGNTGSS 180 PGFPKEESFT SSPDAEEFQF DESFWSETLS MPLESFDVPM EPCDAFGAAA SSASADDMDY 240 WLRVFMESGD VQHELPQI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT039884 | 1e-158 | BT039884.1 Zea mays full-length cDNA clone ZM_BFc0049A07 mRNA, complete cds. |
GenBank | HQ858709 | 1e-158 | HQ858709.1 Zea mays clone UT1165 MYB transcription factor mRNA, partial cds. |