PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG346600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 283aa    MW: 30881.3 Da    PI: 6.4326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG346600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-181865148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT +Ed llv+ v+q+G g+W+++++  g++R++k+c++rw +yl
  Pavir.7NG346600.1.p 18 KGPWTSQEDTLLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 65
                         79********************************************97 PP
2Myb_DNA-binding54.23.3e-1771115147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Pavir.7NG346600.1.p  71 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115
                          8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2091365IPR017930Myb domain
SuperFamilySSF466892.21E-2916112IPR009057Homeodomain-like
SMARTSM007172.3E-151767IPR001005SANT/Myb domain
PfamPF002499.1E-171865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-231972IPR009057Homeodomain-like
CDDcd001673.54E-112065No hitNo description
PROSITE profilePS5129425.39666120IPR017930Myb domain
SMARTSM007176.6E-1670118IPR001005SANT/Myb domain
PfamPF002491.0E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2473118IPR009057Homeodomain-like
CDDcd001671.34E-1075116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEAAPLGWGR QEVDGWRKGP WTSQEDTLLV EHVRQHGEGR WNSVSKLTGL KRSGKSCRLR  60
WVNYLRPDLK RGKITPQEES IIVQLHALWG NRWSTIARSL PGRTDNEIKN YWRTHFKKGK  120
PSKNIERARA RFLKQRQEMQ SQQQQLLQLA AGQVAKDENQ DGGGARTGAD DDDRGSAVVD  180
DACAAPSSPA LAAEAETAAG HHHHEDLIMH DAMDFMCPMS CALLLHGAVH QGGGTGSCCG  240
STASDEYGSG EEDGATWGSL WNLDDGVVVD DVTTAAGACT LW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261811827126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG346600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096201e-131AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824833.11e-146transcription factor MYB8-like isoform X2
TrEMBLA0A3L6PVQ31e-150A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like
STRINGPavir.Gb01276.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-63myb domain protein 79