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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7NG342100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
YABBY |
Protein Properties |
Length: 277aa MW: 29110.4 Da PI: 7.4177 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG342100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 179.4 | 2.1e-55 | 26 | 229 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkee....................... 70
eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC +llsvnl+ ++ aa++++ + ++
Pavir.7NG342100.1.p 26 EQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCGNLLSVNLRGLLlpTAAAATNQIPFGGGQQqallsptsphglldemmlpfqqa 115
579*******************************************99844455566666555555578889999999766666666655 PP
YABBY 71 ...........lleelkveeenlksnvekeesastsvssekl......................senedeevprvpp.virPPekrqrvP 126
st +s ++ +e + +p+ ++ ekrqrvP
Pavir.7NG342100.1.p 116 pslpsaepasaC--------------------VSTITSINNScgggnndapvmlsmapppqvkpAPQEPQLLPKSTAsGNKSSEKRQRVP 185
544432222221....................22222222223333333444456677776665556667777766658*********** PP
YABBY 127 saynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
saynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl
Pavir.7NG342100.1.p 186 SAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPQIHFGL 229
******************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MMSSVPVPEM FAVDQHLAPQ QPAAVEQEQL CYVHCKCCDT ILAVGVPCSS LFKTVTVRCG 60 HCGNLLSVNL RGLLLPTAAA ATNQIPFGGG QQQALLSPTS PHGLLDEMML PFQQAPSLPS 120 AEPASACVST ITSINNSCGG GNNDAPVMLS MAPPPQVKPA PQEPQLLPKS TASGNKSSEK 180 RQRVPSAYNR FIKDEIQRIK ASNPDITHRE AFSAAAKNWA HFPQIHFGLM PDQGLKKTSI 240 QSQEGGEYML FKDGLYAAAA AAAAAAAAST MGIAPF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}. |
Functional Description ? help
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Source |
Description |
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. |
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |