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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7NG320500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GRF |
Protein Properties |
Length: 382aa MW: 40971.9 Da PI: 9.1054 |
Description |
GRF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG320500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRC | 76.6 | 2.5e-24 | 114 | 158 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
d+epgrCrRtDGKkWRC +++ +++k+CErH+hrgr+rsrk++e+
Pavir.7NG320500.1.p 114 DPEPGRCRRTDGKKWRCAKEAAPDSKYCERHMHRGRNRSRKPVEA 158
79****************************************996 PP
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2 | QLQ | 56.4 | 9.1e-20 | 59 | 94 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
+FTaaQ ++L++Q+l+yKyL+a++PvP +Ll++i++
Pavir.7NG320500.1.p 59 PFTAAQYEELEHQALIYKYLVAGVPVPLDLLLPIRR 94
9*********************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MAMPFASLSP AADHRPSSLL PFCRAAPLSA VGEADAQQQH HQQQQQAMSG GRWAARPAPF 60 TAAQYEELEH QALIYKYLVA GVPVPLDLLL PIRRGFVYHQ PALGHGPYFG KKVDPEPGRC 120 RRTDGKKWRC AKEAAPDSKY CERHMHRGRN RSRKPVEAQL VAPPHAQQQA PAPTSGFQNQ 180 SPYPAVLAGN GVRGGGGGGG GGGVGTCTFG LGSRSTAQLH MDSAAAYATA AGGGSKDLRY 240 PAYGVRSLSD EHSQLMPAAM DNSMDNSWRL LPSQTPTFQA TSYPLFGTLS GLDESTIASL 300 PKTQREPLSF FGSDFVTVKQ ESQTLRPFFD EWPKARNSWP ELGDDNSLAS FSATQLSISI 360 PMATSDFSNT SSRSPSGIPS R*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF515845 | 0.0 | EF515845.1 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds. |