PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG319600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 227aa    MW: 23308.3 Da    PI: 12.0054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG319600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000696118123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ Cgk++++   L  H  +H
  Pavir.7NG319600.1.p  96 YECSVCGKVYPSYQALGGHKTSH 118
                          99**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-594120No hitNo description
PROSITE profilePS501579.78596123IPR007087Zinc finger, C2H2
PfamPF139126.6E-1496120IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSLDAAVDVS SKPPVPPPSP PRVDSWARGG RRSKRRAGSP SGGGGADQSE EEYLALSLLM  60
LSRGIRGDAG EGGGVVAAAA KGAGAAAAAK AAGQGYECSV CGKVYPSYQA LGGHKTSHRK  120
PPTPPPAPAP QAAAAPAGDE AAPLGGGVAH AEEKVHQRWA GTSGCTTRAA PRARTGSRPT  180
RPRPAQPRRR PCSGTSTSTC LPRPRPPRRR RWRTPRARFR RPSGRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG319600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432381e-159AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802618.11e-48zinc finger protein 36-like
TrEMBLA0A2T7EY282e-47A0A2T7EY28_9POAL; Uncharacterized protein
STRINGPavir.J16973.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.13e-14C2H2 family protein