PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG319200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 275aa    MW: 30225.5 Da    PI: 8.9622
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG319200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.33.5e-331973155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprlrWtpeLH+rFv+av++LGG+e+AtPk++l+lm++kgLtl+h+kSHLQkYRl
  Pavir.7NG319200.1.p 19 KPRLRWTPELHQRFVDAVDKLGGPEEATPKSVLRLMGMKGLTLYHLKSHLQKYRL 73
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5711676IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-321674IPR009057Homeodomain-like
SuperFamilySSF466891.79E-161974IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-241974IPR006447Myb domain, plants
PfamPF002493.2E-102172IPR001005SANT/Myb domain
PfamPF143796.5E-22117162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMEGSYGGGG GGAMSRDPKP RLRWTPELHQ RFVDAVDKLG GPEEATPKSV LRLMGMKGLT  60
LYHLKSHLQK YRLGRQGKKS TGLELANGSG VAAQGLSFPH PTHVPGVPGE GKNTGEMPLA  120
EALKYQIQVQ RKLQEQLEVQ KKLQMRIEAQ GKYLKAILEK AKGNISFDVN APIDNIESTR  180
SQLMDFNLAL SGFMDNATQV CEESNGQLVK AISDDSHKDK LGFQLYQLGS QEAKEDKWTP  240
KTEDSLRLDL NIKGGYDLSS RGMQACELDL KINQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-211975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-211975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-211975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-211975157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.442400.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG319200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824515.11e-174myb family transcription factor PHL11-like
TrEMBLA0A3L6Q6Y41e-177A0A3L6Q6Y4_PANMI; Myb family transcription factor APL-like
STRINGPavir.Gb00791.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.18e-52G2-like family protein