PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG315300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 340aa    MW: 35779.4 Da    PI: 7.8715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG315300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-1390141155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  Pavir.7NG315300.1.p  90 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRSDQASIVSGAIDFVKELE 141
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1788157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-1588145No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1488145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.40289140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-1190141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MLQTPIDMTL EALCAPSTSS DVLVYDTFNA AAVSRAAASP GSFLFGNAPV VEPFPAPADA  60
EGANRVQQQG RRKRRRRQRT VKNAEDAESQ RMTHIAVERN RRRQMNEYLA VLRSLMPESY  120
VHRSDQASIV SGAIDFVKEL EQQLQSLEAQ KMALLQRRGD TASERGAPRA PDRGEAATNS  180
SASVTGEDAA ERAPDGGAGA EEASRASAVA DVEVGVVVDA HASLRVMARR RPGQLLKMVA  240
GMQALGLAVL HLNVTAAPGG LALYTLNLKV EEACGLTTAE DIAAAAHHVL CIIDAEAAAA  300
AAARSRRGAA GTLFGTCPRP LHRRGLPEHG TNCGCSSSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977GRRKRRRRQ
27076RRKRRRR
37175RKRRR
47178RKRRRRQR
590101RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG315300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825670.11e-121transcription factor bHLH96-like isoform X1
TrEMBLA0A3L6QAM51e-132A0A3L6QAM5_PANMI; Transcription factor bHLH96-like
STRINGPavir.J15346.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-39bHLH family protein