PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG313800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 353aa    MW: 37464.2 Da    PI: 8.4936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG313800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-1283134155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ L +l+P++   +  + + a+i+  A++++k+L+
  Pavir.7NG313800.1.p  83 QRMTHIAVERNRRRQMNEYLAVLLSLMPES---YVHRSDQASIVSGAIDFVKELE 134
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-1381138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1681150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-1381138No hitNo description
PROSITE profilePS5088814.53882133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-1083134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-1088139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTLEALCAPS TSSDVLVYDT FNAAAASCAA ASPRSFLFGN APVVEPFPAP ADAEGANRVQ  60
QQGRRKRRRR QRTVKNAEDA ESQRMTHIAV ERNRRRQMNE YLAVLLSLMP ESYVHRSDQA  120
SIVSGAIDFV KELEQQLQSL EAQKMALLQR RGDTASERGA PRAPDRGEAA TNSSASVTGE  180
DAAERAPFAR FFRYPQYAWR HAPAREDGGA GAEEASRASA VADVEVGVVV DAHASLRVMA  240
RRRPGQLLKM VAGMQALGLA VLHLNVTAAP GGLALYTLNL KVEEGCGLTT AEDIAAAAHH  300
VLCIIDAEAA AAAAAARSRR GAAGTLFGTC PRPLHRRGLP EHGTNCGCSS SA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270GRRKRRRRQ
26369RRKRRRR
36468RKRRR
46471RKRRRRQR
58394RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG313800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613231e-118BT061323.1 Zea mays full-length cDNA clone ZM_BFb0135D07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825670.11e-139transcription factor bHLH96-like isoform X1
TrEMBLA0A3L6QAM51e-150A0A3L6QAM5_PANMI; Transcription factor bHLH96-like
STRINGPavir.J15346.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-40bHLH family protein