![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7NG304600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GRAS |
Protein Properties |
Length: 626aa MW: 65618.1 Da PI: 7.4155 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG304600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pvi&pid=Pavir.7NG304600.1.p) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 300.3 | 4.9e-92 | 257 | 625 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
++lL e+A a+++g++e+a + La l+ a+++gd+ qRl+a+++ AL++r++ +vs l++ l+ +e+ a +l++++sP++
Pavir.7NG304600.1.p 257 RQLLSEAAVALADGNHEAAATHLAALKRAANQHGDAEQRLIAMMVAALSSRIVPTVSALAQHLAELC-----GAEQRAGSQLLHDISPFF 341
689***************************************************5555554443333.....556666779********* PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfe 177
+++ +a aI+eav ++++H +Dfd+s Q +aL+q La+R+ + sl++T+v +p s ++ +l +++e L+++Ae+ g++ +
Pavir.7NG304600.1.p 342 RLALQAASVAIVEAVGDHRAIHLVDFDVSL-QQHAALIQYLADRRVPGTSLKVTAVTDPGSPytqsQTATLTAIREPLKQLAERAGIEYR 430
****************************97.7*************************9887678889999******************** PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
f+v v r ++l+ ++L + pgEalaVnl+++l +++desvs +++rde+L+ v+ lsP+vv +veqe+++n++++++rf++a+ +y a+
Pavir.7NG304600.1.p 431 FEV-VRCRAAELDASRLGCAPGEALAVNLAFALSHVPDESVSPANPRDELLRRVRALSPQVVALVEQELNTNTAPLAARFTDACAHYGAI 519
**9.6889********************************************************************************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
++sl+a+l+res+e++ ++ l++++ n+v eg +r er+e ++kWr+r+++aGF+pv+l+ +a+q+ + + + g +v+ e+g
Pavir.7NG304600.1.p 520 LESLDATLGRESSEKKARAEAALAKKAANAVGREGPDRLERCEVFGKWRARFGMAGFRPVALGPGIADQVAARVGPAP-PGITVKAENGV 608
************9988888888********************************************************.9********** PP
GRAS 358 lvlgWkdrpLvsvSaWr 374
l l+W++r ++++SaWr
Pavir.7NG304600.1.p 609 LRLCWMGRVVTVASAWR 625
****************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 626 aa
Download sequence Send
to blast |
MEPGAPWRDP RQGYAYGVGS ALQMQLQQRA DAAAGGGVLK RSLGELERWQ HQQQQHVAAQ 60 QALYLRAVKQ RTAAAADIAA LLGGGPTQPL VLSGSSYGGV LASPSSTLSS LTTASRAAVP 120 LLHPHPQPQP QRQVPLMTSS PQTQAFGLSR APPPQPAASS ELFILQELEK QLLNDDDDEP 180 VAAMSGTGSA VTNSEWEETI QQLNSITAAP SPGLPAAAAP NNNNANAGMT RSPSNSSSST 240 ASSSASFSPP TPGAASRQLL SEAAVALADG NHEAAATHLA ALKRAANQHG DAEQRLIAMM 300 VAALSSRIVP TVSALAQHLA ELCGAEQRAG SQLLHDISPF FRLALQAASV AIVEAVGDHR 360 AIHLVDFDVS LQQHAALIQY LADRRVPGTS LKVTAVTDPG SPYTQSQTAT LTAIREPLKQ 420 LAERAGIEYR FEVVRCRAAE LDASRLGCAP GEALAVNLAF ALSHVPDESV SPANPRDELL 480 RRVRALSPQV VALVEQELNT NTAPLAARFT DACAHYGAIL ESLDATLGRE SSEKKARAEA 540 ALAKKAANAV GREGPDRLER CEVFGKWRAR FGMAGFRPVA LGPGIADQVA ARVGPAPPGI 600 TVKAENGVLR LCWMGRVVTV ASAWR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727975 | 0.0 | KJ727975.1 Zea mays clone pUT6089 GRAS transcription factor (GRAS52) mRNA, partial cds. |