PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG287500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 587aa    MW: 60631.7 Da    PI: 8.5089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG287500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0585107123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k F r  nL+ H r H
  Pavir.7NG287500.1.p  85 FVCEVCNKGFQREQNLQLHRRGH 107
                          89*******************88 PP
2zf-C2H211.60.00086162184123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H + +
  Pavir.7NG287500.1.p 162 WKCDKCSKRYAVQSDWKAHSKIC 184
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-684107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-784107No hitNo description
SMARTSM003550.004185107IPR015880Zinc finger, C2H2-like
PfamPF121713.8E-585107IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09485107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-7157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MASNSSAAAF FGIRDGDQQD QIKPLLSPQQ QHQLAAALPG AASSAPASGQ GAPTAPPPKK  60
KRTLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLKQKNPLQ  120
AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPTSLSSLTG HLYGATNAGN  240
MALSLSQVGS HLNSTLQDGH HHPSPELLRL GAAAGGGGGS IAARLDHLLS PTSGASAFRP  300
APQGSAAFFL NAAAAAGQDF GDDAGNGPHS FMQGKPFHGL MQLPDLQCNG AGGPGGSAPG  360
LFNLGFFANN GNSSGSSHEH ASQGLMNNDQ FSGGAGGGGG GGGSEASAAG IFGGNFVGGG  420
DHVPTPGFFG GDQATMLPQM SATALLQKAA QMGATSNPNG AASMFRGFVG SSPHGRPATP  480
HMEQSEANLN DLMISLAGGG VSAAGMFGGG NGAGMFDPRQ LCDMEHEVKF GQGGGDMTRD  540
FLGVGGGGIV RGISTPRGGD HQSSSDMSSL EAEMKSASSF NGGRMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34158224369Zinc finger protein JACKDAW
5b3h_F2e-34158224369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391403SGGAGGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45240.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG287500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548660.0AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds.
GenBankBT0641200.0BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824078.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824079.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824080.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824082.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824083.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A3L6PX340.0A0A3L6PX34_PANMI; Uncharacterized protein
STRINGPavir.Gb01057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-104indeterminate(ID)-domain 12