PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG276500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 648aa    MW: 67627.7 Da    PI: 6.3759
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG276500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.92.4e-293614904136
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                           L ++A+a + g+   a+++Larl+++  p g+p+ R a+yf+eAL   l++      +  +++ ts+ +++ +laa+k fs++sP+l+f
  Pavir.7NG276500.1.p 361 ELAAAAKAAEVGNSIGAREILARLNQQLPPIGKPFLRSASYFKEALLLVLTD-----GHHGSTRVTSPLDVALKLAAYKSFSDLSPVLQF 445
                          6999***********************************************9.....55556666666779******************* PP

                 GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp 136
                          +++ta qa+l++++    +++ +iDfd++ G+QW+++lq+La R 
  Pavir.7NG276500.1.p 446 ANFTATQALLDEIACTtaSCIRVIDFDLGVGGQWASFLQELAHRL 490
                          ***********87755559***********************995 PP
2GRAS1203e-37502646224374
                 GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                           +  L+lvk+lsPkvvv +++ +d+++ sF ++f+++l+ ++ l+dsl+a  ++++++++k+Er+l++++++++v  + ++     e+ +
  Pavir.7NG276500.1.p 502 LPMSLQLVKQLSPKVVVAIDHGSDRGDLSFSQHFMNCLQSCMFLLDSLDAA-GTDADAASKIERFLIQPRVEDAVLGRRRA-----EKPM 585
                          56679*******************************************999.8999*******************976665.....9999 PP

                 GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           W++ +++aGF p+pls+ a++qa++ll++v+++g++ve+    l l+W++ +LvsvSaWr
  Pavir.7NG276500.1.p 586 AWQAVFTSAGFAPIPLSNLAEAQADCLLKRVQVRGFHVEKCGMGLALYWQRGELVSVSAWR 646
                          ************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.333332647IPR005202Transcription factor GRAS
PfamPF035148.4E-27361490IPR005202Transcription factor GRAS
PfamPF035141.0E-34502646IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MRAAPFSAEG NGAGTIEALL WPEGKGGGGG SLLLVEPTSV LDCRRSPSPP YSTSTLSSSL  60
GGAAGDSSSG VAAVSENSAA AAEATKWAAP GEHGGGGAGR KEDWPGGELP PIPGTLDVGF  120
GGEEGWDAML GDAAAAAGQE QTFLNWIMAA PGEMEPPLQH HHQLLGNAAG FGFPASDPLG  180
FSLQHRPGGG GGASAGALAS DLSSPGARSF TSSSGSSSKA TSTFGLLPIE APLQTPATTT  240
MPFHDGGADI KPPLLGVPSA SASLLLNQHQ PSPAASFFMP LPSFPDHQHQ PHLPPPPKRH  300
HSMPDNLFLL QNQLQPPPQQ GLPFPPLHTT APFQLQTSLQ PPRGAMKTTA AAQQQQQLLG  360
ELAAAAKAAE VGNSIGAREI LARLNQQLPP IGKPFLRSAS YFKEALLLVL TDGHHGSTRV  420
TSPLDVALKL AAYKSFSDLS PVLQFANFTA TQALLDEIAC TTASCIRVID FDLGVGGQWA  480
SFLQELAHRL CLPVGCSART PLPMSLQLVK QLSPKVVVAI DHGSDRGDLS FSQHFMNCLQ  540
SCMFLLDSLD AAGTDADAAS KIERFLIQPR VEDAVLGRRR AEKPMAWQAV FTSAGFAPIP  600
LSNLAEAQAD CLLKRVQVRG FHVEKCGMGL ALYWQRGELV SVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-13506646226375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.23290.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG276500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634500.0BT063450.1 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167982.10.0uncharacterized protein LOC100381701
TrEMBLA0A2T7CYF10.0A0A2T7CYF1_9POAL; Uncharacterized protein
STRINGGRMZM2G037792_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-44GRAS family protein