PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG274400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 591aa    MW: 61534.5 Da    PI: 6.4631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG274400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05107124219
                          EETTTTEEESSHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                          +C++Cgk F++++++ +H
  Pavir.7NG274400.1.p 107 VCKNCGKEFTSWELFLQH 124
                          7****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-52349No hitNo description
PROSITE profilePS501579.642653IPR007087Zinc finger, C2H2
SMARTSM003550.962648IPR015880Zinc finger, C2H2-like
PfamPF139120.00212748IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SMARTSM00355260106126IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.6E-8274297No hitNo description
PfamPF139121.4E-9274299IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221275302IPR007087Zinc finger, C2H2
SMARTSM003550.13275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
SuperFamilySSF576675.6E-8397424No hitNo description
PROSITE profilePS501579.182402424IPR007087Zinc finger, C2H2
PfamPF139125.0E-11402425IPR007087Zinc finger, C2H2
SMARTSM003553.7402424IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280404424IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MCEASFLMPP SPSPPRPPGQ PPEFKHFCRV CNKGFTCGSA LGGHMRAHGA SDVDGFGADD  60
DSLGDEASAA RCRGSDDQWD AVGTSSAATH AYTLRANPNR LIRSCQVCKN CGKEFTSWEL  120
FLQHGKCNSE DEVQLDGSGS LRSSSPPSDA DGEEDPAAVA AAWSKGKRSR RVKLMIGGED  180
HSGMASSRQD TSGDEEEDLA NCLVMLSSSN VGQTTVARTD KQERCASTAK EGDGGPALQL  240
QPISFFVPPP EPIVALPSAV APPPQYITPS SRNVFECKAC KKVFTSHQAL GGHRASHKKV  300
KGCFAAKFEG NAGEPTRHSA VGGDSNNITG KGAAVDEVNT GVSTEAKTSI YAATSDLDTK  360
TGTSSEVAAA SLSMSLAPMG HSSSPVTTLT VAAPCKKNSK MHECSVCHRL FTSGQALGGH  420
KRCHWLTSST ADPCNPVANM IPPLTEDIVG VVRHQLTTLQ QMVDTPEPVL DLTIAARPAA  480
LAAASVARPE AGSSSFHLEA LAPVHLQPLA VAAPSTGSHR KKTTATSSHH AADKVAEDDE  540
ADSTAAKRAK LSDLKDVVSM DGEPTGPWLQ VGMGSSSAGG DDKSRESAIN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG274400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825379.10.0zinc finger protein ZAT4-like
TrEMBLA0A3L6Q3880.0A0A3L6Q388_PANMI; Uncharacterized protein
STRINGPavir.Gb01112.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-14C2H2 family protein