PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SBP

Protein Properties

Length: 370aa MW: 37618.3 Da PI: 11.1393

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG273800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.7	5e-41	103	179	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+a+l+ ak+yhrrhkvC vhskap v+v g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++ Pavir.7NG273800.1.p 103 RCQVEGCHAELAGAKDYHRRHKVCAVHSKAPRVVVLGAEQRFCQQCSRFHAVSEFDDAKRSCRRRLAGHNERRRKSN 179 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-34	99	165	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.445	101	178	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-38	102	181	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-31	104	177	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MHWAPAGSSP PYPQQPFVAR PGGGAASHHH HHQQQQELTC LKLGKRPCCW AGAVGTPAAQ 60 AGAALPPQVH GNGAAAGGAS GTAAEGRRKE KAGAATAAAG APRCQVEGCH AELAGAKDYH 120 RRHKVCAVHS KAPRVVVLGA EQRFCQQCSR FHAVSEFDDA KRSCRRRLAG HNERRRKSNA 180 SEAMARGAAH PHAMAPFGHG FLPPCGLPAA SPAGALSLLS SARGAGAPWL GPAPYISARS 240 SAALDELIAE NRAALLAWHF SDRLAPGRHR LAPPSSAAHH PHNGAGAWRR RPVLPRGAGQ 300 RGAHDAGPHA AAAAAATTAA PAGAPPFRPV PERAGAAARP PRTKDNGGAA GCSSDDAWAP 360 AGGGGARAL*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MHWAPAGSSP PYPQQPFVAR PGGGAASHHH HHQQQQELTC LKLGKRPCCW AGAVGTPAAQ  60
AGAALPPQVH GNGAAAGGAS GTAAEGRRKE KAGAATAAAG APRCQVEGCH AELAGAKDYH  120
RRHKVCAVHS KAPRVVVLGA EQRFCQQCSR FHAVSEFDDA KRSCRRRLAG HNERRRKSNA  180
SEAMARGAAH PHAMAPFGHG FLPPCGLPAA SPAGALSLLS SARGAGAPWL GPAPYISARS  240
SAALDELIAE NRAALLAWHF SDRLAPGRHR LAPPSSAAHH PHNGAGAWRR RPVLPRGAGQ  300
RGAHDAGPHA AAAAAATTAA PAGAPPFRPV PERAGAAARP PRTKDNGGAA GCSSDDAWAP  360
AGGGGARAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-32	95	177	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG273800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU964656	1e-110	EU964656.1 Zea mays clone 280651 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824676.1	1e-144	squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	1e-103	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A3L6PWC6	1e-157	A0A3L6PWC6_PANMI; Squamosa promoter-binding-like protein 7
STRING	Pavir.Gb01121.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10303	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	2e-35	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Pavir.7NG273800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]