PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG272800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 295aa    MW: 30632.5 Da    PI: 5.5856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG272800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19115165155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Pavir.7NG272800.1.p 115 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 165
                          57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
CDDcd000183.17E-31115174No hitNo description
PfamPF008471.7E-13115165IPR001471AP2/ERF domain
PROSITE profilePS5103224.118116173IPR001471AP2/ERF domain
SMARTSM003805.0E-37116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32116174IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22116174IPR016177DNA-binding domain
PRINTSPR003676.9E-11117128IPR001471AP2/ERF domain
PRINTSPR003676.9E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEATAQRDKE AIATHAHAAT TSSSSSSSTS SSSCLINGVP KEVPKSSKTT NKRKRASSPD  60
SQELEANGST GHQGEESSSC CSTDDNVVAS GGNKSQAAAA GGAGSSGSRS GYKHPSYRGV  120
RRRSWGKWVS EIREPRKKSR IWLGTFPTAE MAARAHDVAA LAIKGRAAHL NFPDRAHELP  180
RPASTSPADI QAAAAQAAAA EVQCDAPPSP SSSSAELPSS PAADESPEAA CCLETTHGGD  240
GGQCQDNALF DLPDLLLDLR DGLWWPPVWP AAMAAEEYDG GDVVGMHEPL LWAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18107173572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.253110.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG272800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563381e-125EU956338.1 Zea mays clone 1560970 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824727.11e-128ethylene-responsive transcription factor ERF024-like
SwissprotQ8LBQ73e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1E5VNF51e-129A0A1E5VNF5_9POAL; Ethylene-responsive transcription factor ERF038
STRINGPavir.J17742.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]