PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG271600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 160aa MW: 17991.7 Da PI: 8.2777 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.3 | 1.7e-25 | 66 | 157 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA++vGFsvr+ + +++ +g ++ ++f C keg+r+e++ + +++++ +++ tr+gC a+l++k+++++k++v+k+e+ H+H+ Pavir.7NG271600.1.p 66 EFYKCYAHHVGFSVRVGQGQHKAIDGVVMYKRFLCAKEGFRDEKNLEsgSKRKKYEKTITRCGCGAMLVIKRTENDKYMVIKFEEVHTHA 155 6******************************************9988656666779999******************************* PP FAR1 89 la 90 l+ Pavir.7NG271600.1.p 156 LV 157 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-23 | 66 | 157 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MARRLEFNDV QSDAESVAPI ILAQECTTPQ KSFSIPFCGS SYTPDCDDTM KPKIGMTFAD 60 VDSTKEFYKC YAHHVGFSVR VGQGQHKAID GVVMYKRFLC AKEGFRDEKN LESGSKRKKY 120 EKTITRCGCG AMLVIKRTEN DKYMVIKFEE VHTHALVTP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35277 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG271600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640678.1 | 1e-58 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2T8I9G7 | 1e-47 | A0A2T8I9G7_9POAL; Uncharacterized protein | ||||
TrEMBL | B9FHJ0 | 4e-45 | B9FHJ0_ORYSJ; Uncharacterized protein | ||||
STRING | OMERI12G12740.1 | 6e-41 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-20 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG271600.1.p |