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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7NG269900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 301aa MW: 32064.8 Da PI: 4.8424 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG269900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 143 | 193 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp +ng +r++lg+++tae+Aa a+++a+ +++g
Pavir.7NG269900.1.p 143 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 193
8********.***********9987..*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MLLNAIREHQ LEEPSEALVL DTIRQHLLEE EPAEARPAYR RSESFGSLVA DQWSGSLPFR 60 TDDADDMVVF GALRDAFAYG WLPDGSFAPV KPEPLPSPDD SDYSYDGLGL PYPYPDPEPM 120 TPSSAAATPK TEEAAAGVAR GKHYRGVRQR PWGKFAAEIR DPAKNGARVW LGTYDTAEDA 180 ALAYDRAAYR MRGSRALLNF PLRIGSEIAA AAAAAAAAGD KLPSPEPATS SDSSFSTSSS 240 SSCSTSGSTK RRKRGEAAAA TMAMALVPPP SQLNRPAQPW FPAAAAEPAA MAPRVEQLVI 300 *
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}. |
Uniprot | TISSUE SPECIFICITY: Weakly expressed in roots. {ECO:0000269|PubMed:10945353}. |
Functional Description ? help
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Source |
Description |
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727518 | 1e-109 | KJ727518.1 Zea mays clone pUT5377 AP2-EREBP transcription factor (EREB198) gene, partial cds. |