PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ERF

Protein Properties

Length: 196aa MW: 20056.6 Da PI: 8.7213

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG261900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.1	6e-20	51	100	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +grW+AeIrdp++ +r++lg++ t+e+Aa+a++ a+++++g+ Pavir.7NG261900.1.p 51 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 100 9*****.******954...4***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.79	50	107	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-22	50	108	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.6E-31	50	107	IPR001471	AP2/ERF domain
Pfam	PF00847	7.1E-14	50	99	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-34	50	113	IPR001471	AP2/ERF domain
CDD	cd00018	1.63E-27	51	109	No hit	No description
PRINTS	PR00367	1.6E-10	51	62	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	73	89	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0034059	Biological Process	response to anoxia
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MCGGAIIADF VPAGARRPAS STVSASILSG DELAKEAPAS RAPAPGRKTA YRGIRRRPWG 60 RWAAEIRDPR KGARVWLGTY ATPEDAARAY DVAAREIRGA KAKLNFPPAV GAGGPPATKR 120 RRTKVPAAEE SSGSSFSPAA ALVGPPAVGG AEETLRDCMS GLEAFLGLPL EDADAAAGGG 180 ADDVEAWDAV DLMFA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-21	51	113	6	69	ATERF1
3gcc_A	3e-21	51	113	6	69	ATERF1
5wx9_A	1e-20	51	113	15	78	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5127	0.0	callus\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG261900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064397	8e-95	BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808872.1	2e-87	ethylene-responsive transcription factor ERF071-like
Swissprot	O22259	3e-32	ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBL	A0A2S3HCV5	4e-86	A0A2S3HCV5_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EEX9	4e-86	A0A2T7EEX9_9POAL; Uncharacterized protein
STRING	Pavir.J05942.1.p	1e-131	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47520.1	3e-33	ERF family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG261900.1.p

Publications ? help Back to Top
Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Eysholdt-Derzsó E,Sauter M Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis. Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108 [PMID:29996004]