PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG251500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 279aa MW: 30214.4 Da PI: 9.6166 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77.1 | 2.3e-24 | 170 | 232 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv L+a N +L++el++lkk ++ +++e+ Pavir.7NG251500.1.p 170 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDQLKKACEDMEAEN 232 89*********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.1E-17 | 165 | 230 | No hit | No description |
SMART | SM00338 | 5.3E-21 | 170 | 234 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.9E-22 | 170 | 232 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.587 | 172 | 235 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.44E-11 | 173 | 228 | No hit | No description |
CDD | cd14702 | 1.70E-17 | 175 | 225 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 177 | 192 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MQAYYAAGGQ PYAWHAAQSV PYTAGEPVAV AEGKSKRKSS GAPSVCSASA SGSSDGRSKE 60 TSEKRDASAE HKLLPSTKRR KATSANVQGE PSQNATMQDA AAETRSAAKR RSEGKLLVST 120 TEMTTISNAR PNLNIGINLW SNSPVKAETS GQVINAAAPS HDIPLSHMDE RELKRERRKQ 180 SNRESARRSR LRKQQECEEL AQKVTDLTAI NGTLRSELDQ LKKACEDMEA ENSQLMGELE 240 QGEAPSVVTT LSMHIDTAKV HHGKSHQHRD KNNNDNKG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 192 | RRSRLRK |
2 | 186 | 193 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35462 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG251500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792640.1 | 1e-148 | DNA-binding protein EMBP-1-like isoform X1 | ||||
Swissprot | P25032 | 8e-59 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A2T7BZD1 | 1e-152 | A0A2T7BZD1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J02462.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32150.1 | 5e-26 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG251500.1.p |