PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG238700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 204aa MW: 23126.8 Da PI: 8.3465

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG238700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.5e-23	110	199	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA++vGFsvr+ ++k +g + ++f C keg+r+e++ + +++++ +++ tr+gC a+l++k+++d+k+ v+++e+ H+H Pavir.7NG238700.1.p 110 EFYKCYAHHVGFSVRIGQHKAI--DGVVCYKRFFCAKEGFRDEKNMEscSKRKKYEKTITRCGCGAMLVIKRTEDDKYIVINFEEVHTHV 197 6**************99887..9**************999976777777999*****************************9 PP FAR1 89 la 90 l+ Pavir.7NG238700.1.p 198 LV 199 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-20	110	199	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MLISPVSFSV CSCKFRLLPP YLFGNLSHRF YNLVANMILE GEVSMARRLD FNDVHSDAES 60 VAPIILAREC TTPQKTFSIP FCGSSYTPDC DDTMKPKIGM TFADVDSAKE FYKCYAHHVG 120 FSVRIGQHKA IDGVVCYKRF FCAKEGFRDE KNMESCSKRK KYEKTITRCG CGAMLVIKRT 180 EDDKYIVINF EEVHTHVLVT PKK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.35277	1e-138	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG238700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640678.1	1e-61	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2T8I9G7	4e-52	A0A2T8I9G7_9POAL; Uncharacterized protein
STRING	OMERI12G12740.1	5e-44	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15006	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-17	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7NG238700.1.p