PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG229300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 333aa    MW: 35815.8 Da    PI: 8.8199
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG229300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.45.3e-2520108175
             trihelix   1 rWtkqevlaLiearremeerlr.rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                          rWt+qe+l+Lie++r +e++ r rg+             ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e+  ++++
  Pavir.7NG229300.1.p  20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggdgagaggAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERVFAARK 108
                          8**************999999853335567778888888*******************************************9764333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1020102No hitNo description
PROSITE profilePS500906.3532091IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-52090IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSNAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GDGAGAGGAE  60
PTKWAAVAEY CRRHGVDRGP VQCRKRWSNL AGDYKKIREW ERVFAARKEA SFWAMRNDAR  120
RERRLPGFFD REVYDILEGR AVGNVAAAAA TAAARPVVGD VESKAEMTAA AIDGGRGDDG  180
AGLFSSSEDE DDQEDDAATP SPTPTPTPTP PAAPVALPIS EKTADVPRQE SSEQAGTSKR  240
KQPEQIPEDS PAQCGEKRQR SDDNASGRAA MTNLQGQLVE ILDRSSQMVA AQLEAQNINS  300
RLDREQRKDQ VGSLLGVLGK VADALYRIAD KL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14049RGRGRGRARG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.338760.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG229300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493561e-167EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826048.10.0trihelix transcription factor ASR3-like isoform X1
TrEMBLA0A2T8IC050.0A0A2T8IC05_9POAL; Uncharacterized protein
STRINGPavir.J11716.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-49Trihelix family protein