PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG215100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 519aa    MW: 54843.6 Da    PI: 7.4799
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG215100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-17131220186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +Wt+  +  L++a++++ e+l+rg+l++ +We+v+ ++      ++   +s +qCk+k++nl+kryk + ++  +  +++ s++p+f+++
  Pavir.7NG215100.1.p 131 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAGAVtdgqG-KPTgGKSVEQCKNKIDNLKKRYKVECQRLASSGAGAISHWPWFKKM 219
                          5*************************************65532.2223689****************999999999899*********** PP

             trihelix  86 e 86 
                          e
  Pavir.7NG215100.1.p 220 E 220
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.7E-20129222No hitNo description
Gene3DG3DSA:3.40.1160.108.8E-70274511IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536333.14E-51276511IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.486276512IPR015963Uridylate kinase, bacteria
PfamPF006961.9E-17279491IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042548.65E-103279512No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHQPAA PPPQPATAAL QPAPPPQPAQ AFCFADATVA SGAGAGAGSF  60
APAQEESNHH AERGKAAHHA KRARERPDEF SSDGGEYCSY INSGGSGGGG KKGRGGGGSS  120
GASDYRKDRE EWTDGAISSL LDAYTDRFEQ LNRGNLRGRD WEDVAGAVTD GQGKPTGGKS  180
VEQCKNKIDN LKKRYKVECQ RLASSGAGAI SHWPWFKKME QIVGNSASPA TSKALVVVED  240
EKPRQQQQHG SKRYPLSSTG PPTVVGSSRA NPLSNPRWKR VLLKIGGTAL AGAAPQNVDP  300
KIIMLIAREV QVACHHGVEV AIVVGGRNIF CGDNWAAATG TDRASTYPIG MMASVMNSVL  360
LQASLEKIGV ETRVQTALMI QEVAEPYVRR RAIRHLEKGR VVIFGGIGAG IGNPLFTTDT  420
AAALRASEIN ADVVLKGIVG DDEYGCPPRG NTNTPFEHIS FRELAARGFS RMDMTAVTCC  480
EENNIPVVIF NMLEPGNISK AICGDQIGTL VDQSGRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-602705111239Uridylate kinase
3ek5_B3e-602705111239Uridylate kinase
3ek5_C3e-602705111239Uridylate kinase
3ek5_D3e-602705111239Uridylate kinase
3ek5_E3e-602705111239Uridylate kinase
3ek5_F3e-602705111239Uridylate kinase
3ek6_A3e-602705111239Uridylate kinase
3ek6_B3e-602705111239Uridylate kinase
3ek6_C3e-602705111239Uridylate kinase
3ek6_D3e-602705111239Uridylate kinase
3ek6_E3e-602705111239Uridylate kinase
3ek6_F3e-602705111239Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116GGKKGRGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.84130.0callus| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG215100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0675670.0BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823789.10.0uncharacterized protein LOC112899509 isoform X1
TrEMBLA0A2S3I6B50.0A0A2S3I6B5_9POAL; Uncharacterized protein
STRINGPavir.Gb01778.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-159Trihelix family protein