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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG207900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 176aa MW: 18058.6 Da PI: 11.6195 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.7 | 1.7e-09 | 82 | 106 | 27 | 51 |
HHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51 +S LCdae+a+i+fs+ g +yey+s Pavir.7NG207900.1.p 82 ISLLCDAEIALIVFSPAGMFYEYAS 106 8**********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-7 | 81 | 110 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-6 | 82 | 104 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.073 | 82 | 108 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MVAQPNPTPL AVLRLAIAPL PSDGEKRLAE ARVPAGSTAA GARARCRGTG AWSCGGSRTP 60 SAGRCPSPSA ARGSSRWPSS SISLLCDAEI ALIVFSPAGM FYEYASTSRV EPGSGDVRNQ 120 VTSGWAAAQH PPAAGMPTPG KTPCAAAALL CSSRGRRTGS LRPGRDRWRS MRSIL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG207900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184819 | 1e-47 | KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Gb01687.1.p | 1e-66 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG207900.1.p |