PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG199600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 287aa    MW: 29245.5 Da    PI: 7.8615
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG199600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer894.8e-282067557
          ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         +YkeC++NhAa++Gg+a+DGCgE+mps     +++alkCaACgCHR+FHRr  
  Pavir.7NG199600.1.p 20 KYKECMRNHAAAMGGQAFDGCGEYMPS-----SPDALKCAACGCHRSFHRRAA 67
                         7*************************9.....799****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.6E-232066IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-242066IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-202065IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.1712166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.94E-19153225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-30156226IPR009057Homeodomain-like
TIGRFAMsTIGR015656.1E-27167224IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMDQLSLVPY EGAGGGGDGK YKECMRNHAA AMGGQAFDGC GEYMPSSPDA LKCAACGCHR  60
SFHRRAAGSS SPSCGAAAPV FFRPPPQHYH HQAALQAFLP SVPAAAAPHL ALPYHAVPNA  120
AAAAAAAPWL ARSGSETPPR ADDFGVAAGT GTGSGSGSGS GSGGFGRKRF RTKFTPEQKE  180
RMREFAEKQG WRIQRNDDGA LERFCDEIGV KRQVLKVWMH NHKNQLASTS PAAAAAEGIG  240
INPAAPGMGT GAGSGAGVSG DGHDDDTDGS PPHAAVSSPS PSPISV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-251682291879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG199600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270251e-120KJ727025.1 Zea mays clone pUT4006 ZF-HD transcription factor (ZHD15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975654.11e-112zinc-finger homeodomain protein 8-like
SwissprotQ7X7N36e-83ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A1E5VKC01e-113A0A1E5VKC0_9POAL; Zinc-finger homeodomain protein 8
STRINGOMERI04G10740.11e-87(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-36homeobox protein 21