PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG192300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 213aa    MW: 22742.7 Da    PI: 5.6842
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG192300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-173483255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Pavir.7NG192300.1.p 34 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 83
                         69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-353497IPR001471AP2/ERF domain
PROSITE profilePS5103223.5123491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-313491IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-213491IPR016177DNA-binding domain
PRINTSPR003677.5E-103546IPR001471AP2/ERF domain
CDDcd000186.16E-303591No hitNo description
PfamPF008474.4E-113583IPR001471AP2/ERF domain
PRINTSPR003677.5E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDRMGKHLQM PPMTSSSGGG SSSPPPPPPQ QQQQYRGVRK RKWGKWVSEI RQPGTKTRIW  60
LGSFESAEMA AVAHDVAALR LRGRDAQLNF PGCVGWLPRP ASTRPGDVRA AAAAAADRVR  120
CDPALLLLQQ QAAAARCRHD DEVELDLVGA GGPGAELLLG GSDEEFELDL GSPRLWAEMA  180
EAMLLDPPGW ATGVGDAEVA QCWSHGSLWD AC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-163391463ATERF1
3gcc_A2e-163391463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG192300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581601e-161EU958160.1 Zea mays clone 1675695 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975709.11e-101ethylene-responsive transcription factor ERF027-like
TrEMBLA0A3L6PYF51e-100A0A3L6PYF5_PANMI; Uncharacterized protein
STRINGLPERR04G10650.19e-69(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-25ERF family protein