PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.7NG187200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 622aa MW: 70426.8 Da PI: 5.1655

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG187200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	271.8	2.2e-83	242	613	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL+ cA+av++++ a +lL++++++as +gd++qRla++f ++L+arl++++ +l k l +++ s e l+a++l+ ++ + Pavir.7NG187200.1.p 242 STLLICCAQAVDTNNYLVAGELLNQIKQHASTTGDATQRLAQCFSKGLEARLMGTGRQLWKLLMAERLS---AMEFLKAYNLYMSACYFN 328 579********************************************************99999998...89************ PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k++++ I ++g++r+Hi+D++i +QW+ L + La+R+ ++pp+++iT++ ++++ + +ee rL+k+A+elg++f f Pavir.7NG187200.1.p 329 KVAYIFSSLSIAGVMKGKSRLHIVDYGIHCAFQWVGLVRWLAKREdGPPPEMKITVMCCSQPSyfPVQWIEEQWYRLSKYASELGLTFVF 418 *****************************************66777*9765555455*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +v v++++ ++ +++L+++ +E+++V+ ++ +l des +s +rd+vL+++k+++P++++ + +++ ++ Fl rf e l yysa Pavir.7NG187200.1.p 419 EV-VTTEWGKVCIDDLNLDADEVVVVSDLFNFSTLKDESIYFDSpnPRDTVLSTIKKMRPNIFIQSILNCSQ-GSCFLSRFREMLFYYSA 506 9.7999*****************************98877779**************9999998.779********** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 lfd+l++ +prese+r+++E+ l+g + n +aceg + ++ e++++W++r ++aG++++pl++ ++k k ++k++ + + + ee + Pavir.7NG187200.1.p 507 LFDMLDVIVPRESETRSVLEQDLFGSCVLNGIACEGVDLVQCPEKYKQWQSRNQRAGLRQLPLRSVVVKVLKDKVKKHHHKDFLLSEEGQ 596 ***************************************************************************888**** PP GRAS 357 slvlgWkdrpLvsvSaW 373 +l++gWk+r+L++ S W Pavir.7NG187200.1.p 597 WLLQGWKGRALFAHSTW 613 *************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.072	215	594	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.5E-81	242	613	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MAATPEEFFA EGLMEPSPPS PSVFLDLTPI SDPNTADKGQ LSHDDLVLPY ISRMLMEDDI 60 DDKLLCQYSD HPALLQAQQP FNQILSSPST GTNKDDAANK DTMDQGNDLL LVSSGDESTL 120 SFGLPNSEYV VGEFLKGMEV ADRLLPRDNS FVKDHQMSQI FIRSKRKHME EELGRTSKIL 180 MMTEVPEETG IREVLDNMMM HGNDTLIRDM EKLRIAMDNK EEKKSRKGCS KVMTTGDMVD 240 LSTLLICCAQ AVDTNNYLVA GELLNQIKQH ASTTGDATQR LAQCFSKGLE ARLMGTGRQL 300 WKLLMAERLS AMEFLKAYNL YMSACYFNKV AYIFSSLSIA GVMKGKSRLH IVDYGIHCAF 360 QWVGLVRWLA KREDGPPPEM KITVMCCSQP SYFPVQWIEE QWYRLSKYAS ELGLTFVFEV 420 VTTEWGKVCI DDLNLDADEV VVVSDLFNFS TLKDESIYFD SPNPRDTVLS TIKKMRPNIF 480 IQSILNCSQG SCFLSRFREM LFYYSALFDM LDVIVPRESE TRSVLEQDLF GSCVLNGIAC 540 EGVDLVQCPE KYKQWQSRNQ RAGLRQLPLR SVVVKVLKDK VKKHHHKDFL LSEEGQWLLQ 600 GWKGRALFAH STWVVEDGSS K*

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MAATPEEFFA EGLMEPSPPS PSVFLDLTPI SDPNTADKGQ LSHDDLVLPY ISRMLMEDDI  60
DDKLLCQYSD HPALLQAQQP FNQILSSPST GTNKDDAANK DTMDQGNDLL LVSSGDESTL  120
SFGLPNSEYV VGEFLKGMEV ADRLLPRDNS FVKDHQMSQI FIRSKRKHME EELGRTSKIL  180
MMTEVPEETG IREVLDNMMM HGNDTLIRDM EKLRIAMDNK EEKKSRKGCS KVMTTGDMVD  240
LSTLLICCAQ AVDTNNYLVA GELLNQIKQH ASTTGDATQR LAQCFSKGLE ARLMGTGRQL  300
WKLLMAERLS AMEFLKAYNL YMSACYFNKV AYIFSSLSIA GVMKGKSRLH IVDYGIHCAF  360
QWVGLVRWLA KREDGPPPEM KITVMCCSQP SYFPVQWIEE QWYRLSKYAS ELGLTFVFEV  420
VTTEWGKVCI DDLNLDADEV VVVSDLFNFS TLKDESIYFD SPNPRDTVLS TIKKMRPNIF  480
IQSILNCSQG SCFLSRFREM LFYYSALFDM LDVIVPRESE TRSVLEQDLF GSCVLNGIAC  540
EGVDLVQCPE KYKQWQSRNQ RAGLRQLPLR SVVVKVLKDK VKKHHHKDFL LSEEGQWLLQ  600
GWKGRALFAH STWVVEDGSS K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-31	248	614	25	378	Protein SCARECROW
5b3h_D	5e-31	248	614	25	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG187200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825321.1	0.0	scarecrow-like protein 33
TrEMBL	A0A2T7CVF5	0.0	A0A2T7CVF5_9POAL; Uncharacterized protein
STRING	Pavir.Ga01717.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-102	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG187200.1.p