PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG186700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 406aa    MW: 42681.4 Da    PI: 6.2002
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG186700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.92.6e-1375156286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +++   +       ++++fd+l+
  Pavir.7NG186700.1.p  75 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKapkSDVQCKNRIDTLKKKYKVERAKPVS-------SWQFFDRLD 156
                          *************************************87788876222667**************99887775.......599999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2273157No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDDDDDVSPD ASPSPASSPG APSAALPVAD PVTVASAPPG GAYPVALPIH RTAASLYATA  60
GGGGGGGGGG REDAWSEGAT SALIDAWGER FVALGRGSLR HPQWQEVADA VSSRDGYSKA  120
PKSDVQCKNR IDTLKKKYKV ERAKPVSSWQ FFDRLDVLLA PTYGSKPGSG GSGGGHNSNS  180
RSPLPAALRM GFPQRSRTPL MPSAAAASKR RAPSPEPSVS SESSDGFPPV PALPAANGKR  240
RTDEGRADGG SGGDRTQGLR DLAQAIRRLG EAYERVEATK LEQAAEMERQ RIDFARELES  300
QRVQFFLNAQ MELTQAKNHA SPAAAAITAG ATTVGGSSRR MSMANDAGGS SNHHSRYRGS  360
HGDWHHHAPR SHYPQYHDNN HAAAAASEGE QSEEEDEDEE EEESQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.323250.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG186700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824455.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A3L6PYH40.0A0A3L6PYH4_PANMI; Trihelix transcription factor ASIL2-like
STRINGPavir.J03372.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-33sequence-specific DNA binding transcription factors